Centre Publications

2021

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Author(s) Title Year Citation
Salimi V, Viegas M, Trento A, Agoti CN, Anderson LJ, Avadhanula V, Bahl J, Bont L, Brister JR, Cane PA, Galiano M, Graham BS, Hatcher EL, Hellferscee O, Henke DM, Hirve S, Jackson S, Keyaerts E, Kragten-Tabatabaie L, Lindstrom S, Nauwelaers I, Nokes DJ, Openshaw PJ, Peret TC, Piedra PA, Ramaekers K, Rector A, Trovão NS, von Gottberg A, Zambon M, Zhang W, Williams TC, Barr IG, Buchholz UJ Proposal for Human Respiratory Syncytial Virus Nomenclature below the Species Level 2021 Emerg Infect Dis. Jun;27(6):1-9 
PubMed link
doi: 10.3201/eid2706.204608
Todd IMF, Miller JE, Rowe SL, Burgner DP, Sullivan SG Changes in infection-related hospitalizations in children following pandemic restrictions: an interrupted time-series analysis of total population data 2021 Int J Epidemiol. May 31:dyab101 
PubMed link
doi: 10.1093/ije/dyab101
Tang JW, Bialasiewicz S, Dwyer DE, Dilcher M, Tellier R, Taylor J, Hua H, Jennings L, Kok J, Levy A, Smith D, Barr IG, Sullivan SG Where have all the viruses gone? Disappearance of seasonal respiratory viruses during the COVID-19 pandemic 2021 J Med Virol. Mar 24 
PubMed link
doi: 10.1002/jmv.26964
Khoury DS, Cromer D, Reynaldi A, Schlub TE, Wheatley AK, Juno JA, Subbarao K, Kent SJ, Triccas JA, Davenport MP Neutralizing antibody levels are highly predictive of immune protection from symptomatic SARS-CoV-2 infection 2021 Nat Med. May 17 
PubMed link
doi: 10.1038/s41591-021-01377-8
Pymm P, Adair A, Chan LJ, Cooney JP, Mordant FL, Allison CC, Lopez E, Haycroft ER, O'Neill MT, Tan LL, Dietrich MH, Drew D, Doerflinger M, Dengler MA, Scott NE, Wheatley AK, Gherardin NA, Venugopal H, Cromer D, Davenport MP, Pickering R, Godfrey DI, Purcell DFJ, Kent SJ, Chung AW, Subbarao K, Pellegrini M, Glukhova A, Tham WH Nanobody cocktails potently neutralize SARS-CoV-2 D614G N501Y variant and protect mice 2021 Proc Natl Acad Sci U S A. May 11;118(19):e2101918118 
PubMed link
doi: 10.1073/pnas.2101918118
Nguyen THO, Koutsakos M, van de Sandt CE, Crawford JC, Loh L, Sant S, Grzelak L, Allen EK, Brahm T, Clemens EB, Auladell M, Hensen L, Wang Z, Nüssing S, Jia X, Günther P, Wheatley AK, Kent SJ, Aban M, Deng YM, Laurie KL, Hurt AC, Gras S, Rossjohn J, Crowe J, Xu J, Jackson D, Brown LE, La Gruta N, Chen W, Doherty PC, Turner SJ, Kotsimbos TC, Thomas PG, Cheng AC, Kedzierska K Immune cellular networks underlying recovery from influenza virus infection in acute hospitalized patients 2021 Nat Commun. May 11;12(1):2691 
PubMed link
doi: 10.1038/s41467-021-23018-x
Chang JJ, Rawlinson D, Pitt ME, Taiaroa G, Gleeson J, Zhou C, Mordant FL, De Paoli-Iseppi R, Caly L, Purcell DFJ, Stinear TP, Londrigan SL, Clark MB, Williamson DA, Subbarao K, Coin LJM Transcriptional and epi-transcriptional dynamics of SARS-CoV-2 during cellular infection 2021 Cell Rep. May 11;35(6):109108 
PubMed link
doi: 10.1016/j.jviromet.2021
Todd AK, Costa AM, Waller G, Daley AJ, Barr IG, Deng YM Rapid detection of human respiratory syncytial virus A and B by duplex real-time RT-PCR 2021 J Virol Methods. May 10;294:114171 
PubMed link
doi: 10.1016/j.vaccine.2021.04.036
Leung VKY, Fox A, Carolan LA, Aban M, Laurie KL, Druce J, Deng YM, Slavin MA, Marshall C, Sullivan SG Impact of prior vaccination on antibody response and influenza-like illness among Australian healthcare workers after influenza vaccination in 2016 2021 Vaccine. May 10:S0264-410X(21)00483-7 
PubMed link
doi: 10.1016/j.vaccine.2021.04.036
Audsley JM, Holmes NE, Mordant FL, Douros C, Zufan SE, Nguyen THO, Kedzierski L, Rowntree LC, Hensen L, Subbarao K, Kedzierska K, Nicholson S, Sherry N, Thevarajan I, Tran T, Druce J Temporal differences in culturable severe acute respiratory coronavirus virus 2 (SARS-CoV-2) from the respiratory and gastrointestinal tracts in a patient with moderate coronavirus disease 2019 (COVID-19) 2021 Infect Control Hosp Epidemiol. May 10:1-3 
PubMed link
doi: 10.1017/ice.2021.223
Lee LY, Zhou J, Koszalka P, Frise R, Farrukee R, Baba K, Miah S, Shishido T, Galiano M, Hashimoto T, Omoto S, Uehara T, Mifsud EJ, Collinson N, Kuhlbusch K, Clinch B, Wildum S, Barclay WS, Hurt AC Evaluating the fitness of PA/I38T-substituted influenza A viruses with reduced baloxavir susceptibility in a competitive mixtures ferret model 2021 PLoS Pathog. May 6;17(5):e1009527 
PubMed link
doi: 10.1371/journal.ppat.1009527
Liao GR, Tseng YY, Tseng CY, Huang YP, Tsai CH, Liu HP, Hsu WL K160 in the RNA-binding domain of the orf virus virulence factor OV20.0 is critical for its functions in counteracting host antiviral defense 2021 FEBS Lett. Apr 28. 
PubMed link
doi: 10.1002/1873-3468.14099
Chappell KJ, Mordant FL, Li Z, Wijesundara DK, Ellenberg P, Lackenby JA, Cheung STM, Modhiran N, Avumegah MS, Henderson CL, Hoger K, Griffin P, Bennet J, Hensen L, Zhang W, Nguyen THO, Marrero-Hernandez S, Selva KJ, Chung AW, Tran MH, Tapley P, Barnes J, Reading PC, Nicholson S, Corby S, Holgate T, Wines BD, Hogarth PM, Kedzierska K, Purcell DFJ, Ranasinghe C, Subbarao K, Watterson D, Young PR, Munro TP Safety and immunogenicity of an MF59-adjuvanted spike glycoprotein-clamp vaccine for SARS-CoV-2: a randomised, double-blind, placebo-controlled, phase 1 trial 2021 Lancet Infect Dis. Apr 19:S1473-3099(21)00200-0 
PubMed link
doi: 10.1016/S1473-3099(21)00200-0
Mills RJ, Humphrey SJ, Fortuna PRJ, Lor M, Foster SR, Quaife-Ryan GA, Johnston RL, Dumenil T, Bishop C, Rudraraju R, Rawle DJ, Le T, Zhao W, Lee L, Mackenzie-Kludas C, Mehdiabadi NR, Halliday C, Gilham D, Fu L, Nicholls SJ, Johansson J, Sweeney M, Wong NCW, Kulikowski E, Sokolowski KA, Tse BWC, Devilée L, Voges HK, Reynolds LT, Krumeich S, Mathieson E, Abu-Bonsrah D, Karavendzas K, Griffen B, Titmarsh D, Elliott DA, McMahon J, Suhrbier A, Subbarao K, Porrello ER, Smyth MJ, Engwerda CR, MacDonald KPA, Bald T, James DE, Hudson JE BET inhibition blocks inflammation-induced cardiac dysfunction and SARS-CoV-2 infection 2021 Cell. Apr 15;184(8):2167-2182.e22 
PubMed link
doi: 10.1016/j.cell.2021.03.026
Hoye BJ, Donato CM, Lisovski S, Deng YM, Warner S, Hurt AC, Klaassen M, Vijaykrishna D Reassortment and persistence of influenza A viruses from diverse geographic origins within Australian wild birds: evidence from a small, isolated population of Ruddy turnstones 2021 J Virol. Apr 12:JVI.02193-20 
PubMed link
doi: 10.1128/JVI.02193-20
Gartner MJ & Subbarao K The threat of zoonotic coronaviruses 2021 Microbiology Australia 
Link
doi: 10.1071/MA21003
Watterson D, Wijesundara DK, Modhiran N, Mordant FL, Li Z, Avumegah MS, McMillan CL, Lackenby J, Guilfoyle K, van Amerongen G, Stittelaar K, Cheung ST, Bibby S, Daleris M, Hoger K, Gillard M, Radunz E, Jones ML, Hughes K, Hughes B, Goh J, Edwards D, Scoble J, Pearce L, Kowalczyk L, Phan T, La M, Lu L, Pham T, Zhou Q, Brockman DA, Morgan SJ, Lau C, Tran MH, Tapley P, Villalón-Letelier F, Barnes J, Young A, Jaberolansar N, Scott CA, Isaacs A, Amarilla AA, Khromykh AA, van den Brand JM, Reading PC, Ranasinghe C, Subbarao K, Munro TP, Young PR, Chappell KJ Preclinical development of a molecular clamp-stabilised subunit vaccine for severe acute respiratory syndrome coronavirus 2 2021 Clin Transl Immunology. Apr 5;10(4):e1269 
Link
doi: 10.1002/cti2.1269
Koutsakos M, Rowntree LC, Hensen L, Chua BY, van de Sandt CE, Habel JR, Zhang W, Jia X, Kedzierski L, Ashhurst TM, Putri GH, Marsh-Wakefield F, Read MN, Edwards DN, Clemens EB, Wong CY, Mordant FL, Juno JA, Amanat F, Audsley J, Holmes NE, Gordon CL, Smibert OC, Trubiano JA, Hughes CM, Catton M, Denholm JT, Tong SY, Doolan DL, Kotsimbos TC, Jackson DC, Krammer F, Godfrey DI, Chung AW, King NJ, Lewin SR, Wheatley AK, Kent SJ, Subbarao K, McMahon J, Thevarajan I, Nguyen TH, Cheng AC, Kedzierska K Integrated immune dynamics define correlates of COVID-19 severity and antibody responses 2021 Cell Rep Med. Mar 16;2(3):100208 
PubMed link
doi: 10.1016/j.xcrm.2021.100208
Deliyannis G, Wong CY, McQuilten HA, Bachem A, Clarke MV, Jia X, Horrocks K, Zeng W, Girkin J, Scott NE, Londrigan SL, Reading PC, Bartlett NW, Kedzierska K, Brown LE, Mercuri FA, Demaison C, Jackson DC, Chua BY TLR-2-mediated activation of innate responses in the upper airways confers anti-viral protection of the lungs 2021 JCI Insight. Mar 8;6(5):e140267 
PubMed link
doi: 10.1172/jci.insight.140267
Tan HX, Juno JA, Lee WS, Barber-Axthelm I, Kelly HG, Wragg KM, Esterbauer R, Amarasena T, Mordant FL, Subbarao K, Kent SJ, Wheatley AK Immunogenicity of prime-boost protein subunit vaccine strategies against SARS-CoV-2 in mice and macaques 2021 Nat Commun. Mar 3;12(1):1403 
PubMed link
doi: 10.1038/s41467-021-21665-8
Geoghegan JL, Di Giallonardo F, Wille M, Ortiz-Baez AS, Costa VA, Ghaly T, Mifsud JCO, Turnbull OMH, Bellwood DR, Williamson JE, Holmes EC Virome composition in marine fish revealed by meta-transcriptomics 2021 Virus Evol. Feb 25;7(1):veab005 
PubMed link
doi: 10.1093/ve/veab005
Rowntree LC, Chua BY, Nicholson S, Koutsakos M, Hensen L, Douros C, Selva K, Mordant FL, Wong CY, Habel JR, Zhang W, Jia X, Allen L, Doolan DL, Jackson DC, Wheatley AK, Kent SJ, Amanat F, Krammer F, Subbarao K, Cheng AC, Chung AW, Catton M, Nguyen TH, van de Sandt CE, Kedzierska K Robust correlations across six SARS-CoV-2 serology assays detecting distinct antibody features 2021 Clin Transl Immunology. Feb 28;10(3):e1258 
PubMed link
doi: 10.1002/cti2.1258
Cunningham AL, McIntyre P, Subbarao K, Booy R, Levin MJ Vaccines for older adults 2021 BMJ. Feb 22;372:n188 
PubMed link
doi: 10.1136/bmj.n188
Wheatley AK, Juno JA, Wang JJ, Selva KJ, Reynaldi A, Tan HX, Lee WS, Wragg KM, Kelly HG, Esterbauer R, Davis SK, Kent HE, Mordant FL, Schlub TE, Gordon DL, Khoury DS, Subbarao K, Cromer D, Gordon TP, Chung AW, Davenport MP, Kent SJ Evolution of immune responses to SARS-CoV-2 in mild-moderate COVID-19 2021 Nat Commun. Feb 19;12(1):1162 
PubMed link
doi: 10.1038/s41467-021-21444-5
Bailie CR, Franklin L, Nicholson S, Mordant F, Alpren C, Stewart T, Barnes C, Fox A, Druce J, Subbarao K, Catton M, van Diemen A, Sullivan SG Symptoms and laboratory manifestations of mild COVID-19 in a repatriated cruise ship cohort 2021 Epidemiol Infect. Feb 10:1-25 
PubMed link
doi: 10.1017/S0950268821000315
Nguyen TH, McAuley JL, Kim Y, Zheng MZ, Gherardin NA, Godfrey DI, Purcell DF, Sullivan LC, Westall GP, Reading PC, Kedzierska K, Wakim LM Influenza, but not SARS-CoV-2, infection induces a rapid interferon response that wanes with age and diminished tissue-resident memory CD8+ T cells 2021 Clin Transl Immunology. Jan 26;10(1):e1242 
PubMed link
doi: 10.1002/cti2.1242
Fielding J, Sullivan SG, Beard F, Macartney K, Williams J, Dawson A, Gilbert GL, Massey P, Crooks K, Moss R, McCaw JM, McVernon J Constructing an ethical framework for priority allocation of pandemic vaccines 2021 Vaccine. Jan 29;39(5):797-804 
PubMed link
doi: 10.1016/j.vaccine.2020.12.053
Lee VY, Bohn-Goldbaum E, Fong J, Barr IG, Booy R, Edwards KM Analgesic and adjuvant properties of exercise with vaccinations in healthy young population 2021 Hum Vaccin Immunother. Jan 26:1-7 
PubMed link
doi: 10.1080/21645515.2020.1859322
Jiang W, Wong J, Tan HX, Kelly HG, Whitney PG, Barr I, Layton DS, Kent SJ, Wheatley AK, Juno JA Screening and development of monoclonal antibodies for identification of ferret T follicular helper cells 2021 Sci Rep. Jan 21;11(1):1864 
PubMed link
doi: 10.1038/s41598-021-81389-z

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